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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20793015_20793880_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20793015 - 20793880
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTCTCTCCACA
Flanking Amino Acid:
THSVCSQHYEDMYTLGGNTF
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.8
38.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
85
0.79
0.7
80.3
25.2
Minor 5ss
31.6
-2.1
2.7
34.1
41.4
Minor BPS
53.5
0.1
2
72.76
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012711
20765513 - 20796037
30525