About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20794280_20795976_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20794280 - 20795976
Intron Length:
1697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTCTCCTCAAAT
Flanking Amino Acid:
FSFSTALQVPDSGKFLIYNE
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
85.6
0.8
0.7
80.6
31.5
Minor 5ss
40.3
-1.1
3.1
56.2
42.2
Minor BPS
63.3
0.5
1.7
77.48
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012711
20765513 - 20796037
30525