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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20801532_20801864_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20801532 - 20801864
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TATTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATTT
Flanking Amino Acid:
EMPPAEMPTKAMTKDERAPT
Intron Amino Acid Position:
1378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
80.8
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.2
0.84
0.8
84.8
35.4
Minor 5ss
36.6
-1.5
3
41.3
44.8
Minor BPS
63.6
0.51
1.5
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011459
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012039
20801281 - 20860959
59679