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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20810210_20810945_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20810210 - 20810945
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
GTCATTTTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TCTTCCTTACTT
Flanking Amino Acid:
SYFSVCKKNDVQAPTEPPQL
Intron Amino Acid Position:
1217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
67.9
0.4
1
64.5
41.4
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
74.9
0.86
1.6
87.41
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011459
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012039
20801281 - 20860959
59679