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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20811112_20812143_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20811112 - 20812143
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TAGGGTTTAATC
Flanking Amino Acid:
PMWIGLNSNVTNGRYEWIDN
Intron Amino Acid Position:
1162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
83
0.74
0.8
81.2
36.5
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
49.7
-0
1.8
58.49
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011459
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012039
20801281 - 20860959
59679