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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20813332_20815225_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20813332 - 20815225
Intron Length:
1894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTATTTGTAACT
Flanking Amino Acid:
HMGFYSYDGQADCVVMRNNP
Intron Amino Acid Position:
1051

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.6
35.9
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
72.8
0.51
1
71.9
38.4
Minor 5ss
35.4
-1.7
2.8
45.8
42.3
Minor BPS
63.3
0.49
2
83.9
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011459
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012039
20801281 - 20860959
59679