About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20815396_20817263_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20815396 - 20817263
Intron Length:
1868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTAA
5'SS Class:
major
3'SS Sequence:
TTTAAAACTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTTAAAA
Flanking Amino Acid:
LATISNEQVQAFLTFHMKDF
Intron Amino Acid Position:
994

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
64.9
37.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.8
0.4
1
60.2
40.2
Minor 5ss
35
-1.7
3.4
46.8
48.5
Minor BPS
70.6
0.64
1.3
75.65
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011459
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012039
20801281 - 20860959
59679