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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20817379_20818120_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20817379 - 20818120
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCATAA
5'SS Class:
major
3'SS Sequence:
GTTCATGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATTTGTTCATGT
Flanking Amino Acid:
HPTWLSFQNKCYKIFGSTED
Intron Amino Acid Position:
956

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
65
37.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
72.8
0.51
0.9
69.7
41.2
Minor 5ss
41.7
-0.9
3.2
56.1
48.1
Minor BPS
43.1
-0.4
2.3
65.98
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011459
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012039
20801281 - 20860959
59679