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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20823257_20824192_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20823257 - 20824192
Intron Length:
936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGGT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
DGFVWSDGSPVRYENWGFGE
Intron Amino Acid Position:
735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
66.3
39.5
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
31.2
-2.2
3.3
45.7
43.5
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011459
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012039
20801281 - 20860959
59679