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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20830653_20834064_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20830653 - 20834064
Intron Length:
3412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTAATGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCCAACTTGACT
Flanking Amino Acid:
QEDCVVMKGKDGFWADHSCE
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
34.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
76
0.58
1
73.6
40.6
Minor 5ss
36.4
-1.5
3.3
47.9
47.8
Minor BPS
59.7
0.38
1.6
72.94
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011459
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012039
20801281 - 20860959
59679