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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20834223_20840090_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20834223 - 20840090
Intron Length:
5868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
AATCTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
ATCTTGTTAATC
Flanking Amino Acid:
YSFIISQLGYQPDDELWIGL
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.3
78.2
37.9
Major BPS
79
0.72
1
80.3
31.7
Major PPT
73
0.52
0.9
70.2
40.4
Minor 5ss
38.1
-1.3
3
56
41.5
Minor BPS
56.5
0.18
2
67.6
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011459
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012039
20801281 - 20860959
59679