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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20850293_20855033_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20850293 - 20855033
Intron Length:
4741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TCTTTGTGATCA
Flanking Amino Acid:
DKMYGFCPLKFNNIDSLWNT
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
86
24.8
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
87
0.83
0.7
81.7
23.1
Minor 5ss
43.1
-0.8
3.1
62.8
42
Minor BPS
45.8
-0.3
2.3
63.26
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011459
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012039
20801281 - 20860959
59679