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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20884201_20885004_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20884201 - 20885004
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATTTTA
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
PGQPAQTSYTNAMVGSVAGN
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
79.7
29.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
45.6
-0.5
2.8
58.5
40.3
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
STAM
Ensembl Gene ID:
ENSAPLG00000010967
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011448
20883951 - 20903185
19235