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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20885181_20887067_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20885181 - 20887067
Intron Length:
1887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTAACTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTATTTAACT
Flanking Amino Acid:
MPSSGVSGSQVYPGQPQGNA
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82
38.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
74.2
0.54
0.9
66.3
40.3
Minor 5ss
38.3
-1.3
3
50.7
45.8
Minor BPS
82.8
1.11
1.3
97
27.3

Associated Gene:

Gene:
STAM
Ensembl Gene ID:
ENSAPLG00000010967
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011448
20883951 - 20903185
19235