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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20892491_20892790_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20892491 - 20892790
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GGGGTTTTAAAT
Flanking Amino Acid:
AGELITILDDSDPNWWKGET
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
38.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.8
0.6
0.9
74.3
40.5
Minor 5ss
47.5
-0.2
2.6
67.8
43
Minor BPS
50.4
0.09
1.5
61.87
42.2

Associated Gene:

Gene:
STAM
Ensembl Gene ID:
ENSAPLG00000010967
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011448
20883951 - 20903185
19235