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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20892984_20894847_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20892984 - 20894847
Intron Length:
1864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAACC
Flanking Amino Acid:
NKKEEEDLAKAIELSLKEQR
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.5
33.9
Major BPS
100
1.24
0.5
100
0
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
30.6
-2.2
2.5
34.1
41.4
Minor BPS
76.3
0.8
1.5
87.12
29.2

Associated Gene:

Gene:
STAM
Ensembl Gene ID:
ENSAPLG00000010967
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011448
20883951 - 20903185
19235