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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20895361_20895890_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20895361 - 20895890
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CGTTATTTAACT
Flanking Amino Acid:
ASEVSNVLNKGHPKVCEKLK
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
77.6
33.1
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
89.4
0.89
0.7
85
29.8
Minor 5ss
38.5
-1.3
3.4
55.5
48.6
Minor BPS
69.9
0.7
1.5
81.57
39.9

Associated Gene:

Gene:
STAM
Ensembl Gene ID:
ENSAPLG00000010967
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011448
20883951 - 20903185
19235