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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20929047_20931643_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20929047 - 20931643
Intron Length:
2597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TATACTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTTTATACTT
Flanking Amino Acid:
VWFIAHSIKQIQNEESVILF
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
71.5
38.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
80
0.67
0.9
73.9
36.3
Minor 5ss
39.1
-1.2
3
49.9
46.5
Minor BPS
49.3
0.03
1.8
71.4
40.7

Associated Gene:

Gene:
HACD1
Ensembl Gene ID:
ENSAPLG00000010942
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011388
20928918 - 20935764
6847