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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20931766_20934035_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20931766 - 20934035
Intron Length:
2270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGAGATG
5'SS Class:
major
3'SS Sequence:
TTTTTTAATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CATTTTTTAATT
Flanking Amino Acid:
NHLPYFIKWARYNFFIILYP
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.1
62.8
43.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.1
0.81
0.8
82.5
32.8
Minor 5ss
28.4
-2.5
3.5
38.2
47
Minor BPS
72.8
0.79
1.1
80
36.6

Associated Gene:

Gene:
HACD1
Ensembl Gene ID:
ENSAPLG00000010942
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011388
20928918 - 20935764
6847