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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20934215_20935681_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20934215 - 20935681
Intron Length:
1467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGATCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTAATCTAATT
Flanking Amino Acid:
LIIVMFSYIPLFPQLYFHML
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
61.9
0.27
1.2
60.2
44.4
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
54.4
0.22
1.9
78.49
37.7

Associated Gene:

Gene:
HACD1
Ensembl Gene ID:
ENSAPLG00000010942
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011388
20928918 - 20935764
6847