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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20984851_20990464_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20984851 - 20990464
Intron Length:
5614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ATATATTCAAGT
Flanking Amino Acid:
NILSSSIKKKRYSEDYYLHI
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
85.2
32.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
92.2
0.95
0.5
92.5
17.5
Minor 5ss
37.2
-1.4
3.6
57.3
47.4
Minor BPS
48.2
-0
2
68.59
42

Associated Gene:

Gene:
ST8SIA6
Ensembl Gene ID:
ENSAPLG00000010714
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011172
20974570 - 21008505
33936