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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_20990552_21001959_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20990552 - 21001959
Intron Length:
11408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
TTTTGTTTGTTT
Flanking Amino Acid:
IRRPEESAKFRSELASCCDA
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
42.8
-0.4
3.6
78.01
39.5

Associated Gene:

Gene:
ST8SIA6
Ensembl Gene ID:
ENSAPLG00000010714
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011172
20974570 - 21008505
33936