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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21002105_21003709_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21002105 - 21003709
Intron Length:
1605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TACTTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GTCTTTTTACTT
Flanking Amino Acid:
TEDIYRMLPVSPSLSVYPFK
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
82.2
0.72
0.9
76.5
37.2
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
57.4
0.31
1.6
71.21
40.9

Associated Gene:

Gene:
ST8SIA6
Ensembl Gene ID:
ENSAPLG00000010714
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011172
20974570 - 21008505
33936