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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21003823_21005133_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21003823 - 21005133
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTTTCTTGATT
Flanking Amino Acid:
AEIDRSDFVFRCNLPPTTGS
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
83.8
0.76
0.8
81.4
35
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
77.3
0.94
1
87.23
31.9

Associated Gene:

Gene:
ST8SIA6
Ensembl Gene ID:
ENSAPLG00000010714
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011172
20974570 - 21008505
33936