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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21005227_21008036_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21005227 - 21008036
Intron Length:
2810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTACTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TTTTCCTAAAAC
Flanking Amino Acid:
VTVNPSIIAQKYNKLNEKKT
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
73.3
0.52
1
69.6
41.2
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
72.1
0.67
1.7
83.76
35.4

Associated Gene:

Gene:
ST8SIA6
Ensembl Gene ID:
ENSAPLG00000010714
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011172
20974570 - 21008505
33936