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Intron Name: Anas_platyrhynchos_platyrhynchos_2_21039254_21039393_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21039254 - 21039393

Intron Length:

140

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCTGA

5'SS Class:

strong_major

3'SS Sequence:

ACTTGTCTCTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAC

U12 Branch Point Sequence:

TAGATATTAACT

Flanking Amino Acid:

IVFLKKLHDEEIRELQAQLQ

Intron Amino Acid Position:

235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.9

38.1

Major BPS

81.9

0.79

0.8

81.9

Major PPT

65.1

0.34

1.1

37.3

Minor 5ss

43.2

-0.7

2.9

56.2

47.9

Minor BPS

60.4

0.4

1.6

75.02

41.2

Associated Gene:

Gene:

VIM

Ensembl Gene ID:

ENSAPLG00000010218

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043773

21036392 - 21044553

8162

ENSAPLT00000010706

21036392 - 21044069

7678