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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21058414_21066485_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21058414 - 21066485
Intron Length:
8072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCCGCC
5'SS Class:
major
3'SS Sequence:
TTATTAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCTTATTAATT
Flanking Amino Acid:
GIGGMHQALRESCTSAEVVA
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.3
57.3
43.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.7
0.62
0.9
75.7
38.1
Minor 5ss
42.1
-0.9
3.4
60.1
44.6
Minor BPS
70
0.71
1.5
84.39
36.6

Associated Gene:

Gene:
TRDMT1
Ensembl Gene ID:
ENSAPLG00000004660
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004818
21058350 - 21085938
27589