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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21067251_21068820_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21067251 - 21068820
Intron Length:
1570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATACA
5'SS Class:
major
3'SS Sequence:
TATTCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTTTCTTTATTC
Flanking Amino Acid:
LMSPPCQPFTRIGLQGDVSD
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
74
36.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85.3
0.79
0.7
81.3
30.2
Minor 5ss
34
-1.8
3
43
44
Minor BPS
67.2
0.52
1.5
74.74
36.3

Associated Gene:

Gene:
TRDMT1
Ensembl Gene ID:
ENSAPLG00000004660
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004818
21058350 - 21085938
27589