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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21072553_21073780_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21072553 - 21073780
Intron Length:
1228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCACTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGCTTTTCAATT
Flanking Amino Acid:
NVKGFESSSARNELLRTLET
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.5
34.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.1
0.61
0.8
74.9
28.8
Minor 5ss
38.7
-1.3
3.4
56.7
47.6
Minor BPS
58.7
0.35
1.5
71.95
39.8

Associated Gene:

Gene:
TRDMT1
Ensembl Gene ID:
ENSAPLG00000004660
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004818
21058350 - 21085938
27589