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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21073851_21074751_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21073851 - 21074751
Intron Length:
901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
ATTTTGCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TTTTGCTACATT
Flanking Amino Acid:
YQEFLLSPTCLGIPNSRLRY
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
70.8
41
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
83.9
0.76
0.8
77.8
36
Minor 5ss
34
-1.8
2.9
43.2
43.8
Minor BPS
48.9
-0
2.4
79.08
43.9

Associated Gene:

Gene:
TRDMT1
Ensembl Gene ID:
ENSAPLG00000004660
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004818
21058350 - 21085938
27589