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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21074836_21075324_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21074836 - 21075324
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ACTTCCTTAATC
Flanking Amino Acid:
EPFFFHAPGQILTRFPDLED
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
79.2
0.66
0.8
77.9
35.5
Minor 5ss
32.4
-2
3
40.7
45.5
Minor BPS
82
0.98
1
80.61
34.3

Associated Gene:

Gene:
TRDMT1
Ensembl Gene ID:
ENSAPLG00000004660
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004818
21058350 - 21085938
27589