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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21075708_21079755_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21075708 - 21079755
Intron Length:
4048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTCCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
ATATACTAAGTT
Flanking Amino Acid:
TCRRSTCFTKGYGHYVEGTG
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.2
38.5
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
71.2
0.48
1
75.7
33.1
Minor 5ss
34.7
-1.7
2.8
35.3
41.4
Minor BPS
47.7
-0.1
2
68.36
42.5

Associated Gene:

Gene:
TRDMT1
Ensembl Gene ID:
ENSAPLG00000004660
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004818
21058350 - 21085938
27589