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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21079814_21081297_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21079814 - 21081297
Intron Length:
1484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
ATATTCTTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
TATTCTTTATAG
Flanking Amino Acid:
SVLQTAVDVQLESVFKHIEN
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
79
0.65
0.8
73.6
36.2
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
58.9
0.14
1.8
65.82
41.8

Associated Gene:

Gene:
TRDMT1
Ensembl Gene ID:
ENSAPLG00000004660
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004818
21058350 - 21085938
27589