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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21096817_21097155_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
21096817 - 21097155
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTTACTTCT
5'SS Class:
weak_major
3'SS Sequence:
AGGTGAGAGAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCCTTTTTAAAA
Flanking Amino Acid:
DLAELFSQVIYNAEIQELKK
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.3
0.08
1.3
59.9
39.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
42.9
-0.4
1.2
30.5
39.7
Minor 5ss
46.6
-0.3
2.5
62.8
36.1
Minor BPS
56.8
0.21
1.4
58.98
41.6

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573