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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21097238_21099019_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
21097238 - 21099019
Intron Length:
1782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
AAATAAAAGGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTGAAAATAAAT
Flanking Amino Acid:
SHQVSLLASKLIACSLAGFQ
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
43.7
-0.3
1.2
33.1
38.7
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
43.8
-0.3
2.1
65.93
43.4

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573