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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21103851_21105009_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21103851 - 21105009
Intron Length:
1159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTGTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ACTGTCTTAAAT
Flanking Amino Acid:
VDAERDQPNKPKYRCICDIG
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
75.8
33.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
72.6
0.51
1.1
69.1
41.8
Minor 5ss
34.3
-1.8
3.2
43.2
38.3
Minor BPS
63.5
0.5
1.5
74.89
42

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573