Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21107529_21108069_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

21107529 - 21108069

Intron Length:

541

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGATGC

5'SS Class:

strong_major

3'SS Sequence:

CTGATCTCCCAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GACTGAA

U12 Branch Point Sequence:

TTTGCCTGATCT

Flanking Amino Acid:

HPMATCTSVSGLMPFCSCPS

Intron Amino Acid Position:

367

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

0.9

68.6

37.4

Major BPS

56.6

0.16

1.2

49.3

Major PPT

59.2

0.21

1.1

56.4

Minor 5ss

44.4

-0.6

2.8

59.5

45.2

Minor BPS

63.2

0.49

1.9

84.91

41.5

Associated Gene:

Gene:

CUBN

Ensembl Gene ID:

ENSAPLG00000003733

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003922

21096379 - 21236951

140573