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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21108192_21109685_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21108192 - 21109685
Intron Length:
1494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATACCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGATCATTAAGT
Flanking Amino Acid:
QNPCTNGQCVATIFGYFCVC
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
77.1
0.61
0.8
71.5
34.4
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
61.7
0.44
1.9
79.24
42.2

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573