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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21109873_21111512_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21109873 - 21111512
Intron Length:
1640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATCCATTTACT
Flanking Amino Acid:
TGPQCQTAQQACGGYLSGSR
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
73.3
37.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.6
0.8
0.8
80.7
31.4
Minor 5ss
40.6
-1.1
2.7
51
45.4
Minor BPS
54.6
0.23
1.9
74.86
41.1

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573