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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21111632_21112474_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21111632 - 21112474
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCCTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGATAAT
U12 Branch Point Sequence:
AAAGAGATAATT
Flanking Amino Acid:
AWVIHTDPNKILRITFPVFQ
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
63.8
0.34
1.2
64.1
39.8
Major PPT
69.9
0.45
1
70
36.6
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
39.3
-0.7
2.3
54.48
40.9

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573