About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21113958_21114732_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21113958 - 21114732
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCGTTCTGTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TAATCCTAAACA
Flanking Amino Acid:
HENCSYDHLEIRDGLLPQDP
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
81.9
32.1
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
72.3
0.5
0.9
65.6
41
Minor 5ss
42
-0.9
3.5
64.1
47.4
Minor BPS
71.2
0.66
1.6
77.73
38.7

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573