About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21129328_21131519_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21129328 - 21131519
Intron Length:
2192

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CCTTCTTTGACC
Flanking Amino Acid:
IRCTEDYVEIRDGGYETSPV
Intron Amino Acid Position:
1111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.9
76
39.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.2
0.57
0.9
66.8
39.3
Minor 5ss
31.1
-2.2
4.1
47
48.3
Minor BPS
72.4
0.69
1.2
73.02
38.9

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573