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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21131681_21132209_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21131681 - 21132209
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCATTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGTCATTATCA
Flanking Amino Acid:
FSAEWDGTSAGCGGTLTTAS
Intron Amino Acid Position:
1165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
71.1
35.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76
0.59
1
75.1
38.7
Minor 5ss
36.7
-1.5
3.1
47.8
47.6
Minor BPS
62.9
0.4
1.9
76.63
40.4

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573