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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21133454_21136038_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21133454 - 21136038
Intron Length:
2585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ACCTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TAATCTATCACC
Flanking Amino Acid:
GGGFLAKYKQDCHEVLTVNR
Intron Amino Acid Position:
1278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.4
1.09
0.7
87
30
Major BPS
79
0.72
1
78.4
31.2
Major PPT
82.8
0.74
0.8
80.2
31
Minor 5ss
35.1
-1.7
2.7
41.5
45.1
Minor BPS
49.6
-0
2
65.4
39.9

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573