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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21136227_21148748_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21136227 - 21148748
Intron Length:
12522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGCTTTTTACCT
Flanking Amino Acid:
GSDCDFDYLKLYDGPDERSN
Intron Amino Acid Position:
1341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
84.9
0.79
0.8
82.2
34.1
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
61.4
0.44
1.6
75.46
41.9

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573