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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21148909_21158182_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21148909 - 21158182
Intron Length:
9274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGTTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GCTCTGTTATCA
Flanking Amino Acid:
SGFQMLWHVNGCGGELSGTS
Intron Amino Acid Position:
1394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
71.6
0.49
1
69.6
40.4
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
45.1
-0.3
2.2
56.74
42.6

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573