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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21158365_21164993_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21158365 - 21164993
Intron Length:
6629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
GTTTCTTCCATT
Flanking Amino Acid:
HPNCNYDVLEVYGGPDFLSP
Intron Amino Acid Position:
1455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
67.6
0.44
1.2
75
40
Major PPT
79.7
0.67
0.8
77.5
29.9
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
53.9
0.2
2
76.63
40.5

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573