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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21165169_21166859_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21165169 - 21166859
Intron Length:
1691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTGTGATAAAAA
Flanking Amino Acid:
FNASWQENPGGCGGIFQATS
Intron Amino Acid Position:
1513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
79.3
28.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.7
0.76
0.8
81.3
35.7
Minor 5ss
31
-2.2
3.2
36.8
41.9
Minor BPS
44.5
-0.4
2.3
61.53
44.3

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573