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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21173441_21174684_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21173441 - 21174684
Intron Length:
1244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTCTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ATGTGTTTCATT
Flanking Amino Acid:
HRGFSARFTEACGSFIESDA
Intron Amino Acid Position:
1619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
74.6
0.55
1
75.1
33.4
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
48.3
-0
2.1
69.26
42.8

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573