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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21174802_21177059_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21174802 - 21177059
Intron Length:
2258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGTTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACCTTTTAAAGT
Flanking Amino Acid:
CSWIIQAQEPFNHVTLSFTD
Intron Amino Acid Position:
1658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.4
0.48
1.1
65.1
45.5
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
47
-0.1
1.9
60.39
44.3

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573